diffeomorphism

Unsupervised Learning for Image Registration

TransMorph: Transformer for Unsupervised Medical Image Registration (PyTorch)

Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

[ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templates

Group-wise diffeomorphic registration and segmentation of medical images.

Joint Atlas Building and Diffeomorphic Registration Learning with Pairwise Alignment

Code for the paper "Preserving Volume for Unsupervised Registration" (ICCV 2023 Poster)

Polaffini - Feature-based affine and polyaffine registration.

Optimisation on Diffeomorphisms

Navigation Function package

[TMI'24] "Masked Deformation Modeling for Volumetric Brain MRI Self-supervised Pre-training".

[ICASSP 2025 Oral] DiffKillR: Killing and Recreating Diffeomorphisms for Cell Annotation in Dense Microscopy Images

[ICASSP 2025 Oral] DiffKillR: Killing and Recreating Diffeomorphisms for Cell Annotation in Dense Microscopy Images

[PR'24] "LDDMM-Face: Large deformation diffeomorphic metric learning for cross-annotation face alignment".

Automated CT registration, segmentation, and quantification (AutoCT)

Exercises for my Nonlinear System Analysis and Control course

Implements the Sigma Transform in Python.

Implements the Sigma Transform in MATLAB/Octave

Easy and elegant complex invertible image distortion