quantitative-imaging

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

dcmqi (DICOM for Quantitative Imaging) is a C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results

This repository enables easy and fast medical image reconstruction in Python.

A Slicer extension to provide a GUI around pyradiomics

Data Consistency Toolbox for Magnetic Resonance Imaging

OHIF Plugin for The Visualization Toolkit (VTK)

Matlab toolbox for polyenergetic quantitative (polyquant) X-ray CT reconstruction with demos.

Segmentation-based measurements with DICOM import and export of the results.

TriDFusion (3DF) Medical Imaging Viewer

An extension to 3D Slicer to support quantitative imaging and image-guided interventions research in prostate cancer.

clathrin-mediated endocytosis analysis

u-inferforce (Traction Force Microscopy) is a MATLAB software that reconstructs traction forces of cells adhered on elastic gel doped with beads.

Processing of raw ratiometric biosensor images (for example based on FRET) into fully corrected "ratio maps" or "activation maps" — images showing the localized activation of the biosensor.

Analyze local cell edge motions (e.g. protrusion and retraction) and to locally sample intracellular fluorescence signals in 2D fluorescence microscopy data.

Maximum Spherical Mean Value for Shadow Reduction

Learning materials for https://github.com/qiicr/dcmqi

A Matlab software package to do 2D cell segmentation.

Intravoxel incoherent motion (IVIM) diffusion-weighted imaging (DWI) quantitative imaging biomarkers extraction from clinical liver MRI

Example OHIF plugin based using OpenLayers

3D Slicer extension for supporting PI-RADS v2 reading