yeast

Learn how to master the art of baking the programmer way.

This recipe is dedicated to helping you make the best possible pizza dough for Neapolitan pizza.

Hardware and software for accessible, extensible, and scalable bioreactors. Built on Raspberry Pi.

The consensus GEM for Saccharomyces cerevisiae

LRSDAY: Long-read Sequencing Data Analysis for Yeasts

Tools for the home brewer

Algorithm for round cells identification in the brightfield microscopy images.

Brouwsoftware

SQLite database with beer brewing ingredients

An automated method to map yeast variants to proteins modifications and functional regions

Official and maintained implementation of the dataset paper "The TYC Dataset for Understanding Instance-Level Semantics and Motions of Cells in Microstructures" [ICCVW 2023].

Saccharomyces Genome Database (SGD) REST API wrapper

Collection of scripts for improving lipid constraints in yeast-GEM

GitHub Repository associated with the piQTL project (Mapping effects of genome-wide genetic variation to protein-protein interactions reveals molecular mechanisms of complex traits) [ Serohijos & Michnick Lab, Université de Montréal ]

Website to show possible hop substitution

HMM for annotating coding regions of DNA in S. cerevisiae chromosome III

Presentations and work done for University of Pittsburgh course, Synthetic Biology.

The metabolic twin model of yeast

Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.