fmri-preprocessing

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

Using computational tools to explore the networks underlying cognitive neuroscience

Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data

Run ICA-AROMA on fMRIPrep derivatives

Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-dependence, and temporal degree of freedom loss.

Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis

Analysis scripts and movie annotations for NNDb

An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.

A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

This code repository contains a collection of Python scripts for classifying autistic and control conditions using Support Vector Machines (SVM), leveraging preprocessed functional MRI (fMRI) data from the ABIDE dataset.

A generally applicable whole-brain preprocessing toolbox for mice and rats

Implementation of LSTM and CNN models for classification of visual stimuli from fMRI data on BOLD5000 dataset

🐀🧠Using Convolutional Neural Networks to Predict fMRI Noise in Rats

Materials for the "fMRI analysis" workshop at the Cognitive Neuroscience Skills Training In Cambridge-2023 (COGNESTIC-2023).

A BIDS App for running rapidtide on a preprocessed fMRI dataset.

legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm

An attempt at an fMRIPost workflow for handling phase data

A collection of python scripts and functions to (po)st(p)rocess fmridata, preprocessed with fmriprep