connectome

Simulate the C. Elegans worm brain in your browser and interact with the worm as it moves around

Graph theory analysis of brain MRI data

A dynamic connectome mapping module in python.

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

Python library for analysis of neuroanatomical data.

STAGIN: Spatio-Temporal Attention Graph Isomorphism Network

A performant, powerful query framework to search for network motifs

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

Compose chunk operators to create a pipeline for local or distributed petabyte-scale computation

A unified framework for skeletonization, morphological analysis, and connectivity analysis.

Please use the new version of LiFE: www.github.com/brain-life/encode

A Hugo theme with backlinks for online communities

A prediction-based extension of network-based statistics.

Fast and memory efficient approach for connectome-wide association studies in R and C++. Uses custom implementation of multivariate distance matrix regression to associate brain and behavior.

GNN with summarization/grouping layer for speed and interpretability

A multipurpose matlab-based MEG/EEG overlay & network plotter

An Explainable Geometric-Weighted Graph Attention Network (xGW-GAT) for Identifying Functional Networks Associated with Gait Impairment

Tools to work with the FlyWire connectome. Fully interoperable with navis.

Pipelines and tools for MRI analysis

Code for implementing the Aggregation-Network diffusion model (AND), as described in the paper: "Combined Model of Aggregation And Network Diffusion Recapitulates Alzheimer’s Regional Tau-PET " by Ashish Raj*, Veronica Tora, Xiao Gao, Hanna Cho, Jae Yong Choi, Young Hoon Ryu, Chul Hyoung Lyoo, Bruno Franchi. *Department of Radiology and Biomedical Imaging, University of California at San Francisco