epidemics

Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.

SORMAS (Surveillance, Outbreak Response Management and Analysis System) is an early warning and management system to fight the spread of infectious diseases.

Network Diffusion Library - (for NetworkX and iGraph)

Mathematical Modeling of Infectious Disease Dynamics

COVID-19 Hospital Impact Model for Epidemics

Python toolbox to evaluate graph vulnerability and robustness (CIKM 2021)

Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.

This repository contains data and code used to get and clean data from https://github.com/CSSEGISandData/COVID-19 and https://www.worldometers.info/coronavirus/

Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022

Simulation, visualization, and inference of individual level infectious disease models with Julia

An R package with over 50 highly cited, read-to-use, up-to-date COVID-19 pandemic data resources

epydemix, the ABC of epidemics

Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.

Open-source repository containing examples and documentation for the Cognizant XPRIZE Pandemic Response Challenge

Source code for the EpiEstim app.

Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool.

COVID-19 spread shiny dashboard with a forecasting model, countries' trajectories graphs, and cluster analysis tools

Python package to estimate the time-varying effective reproduction number of an epidemic from reported case numbers

Course on nowcasting and forecasting of infectious disease dynamics

Epidemics simulation