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ImageJ
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- imagej/imagej
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- imagej.net
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ImageJ is an open source Java image processing program inspired by NIH Image. It runs on any computer with a Java 1.8 or later virtual machine. Downloadable distributions are available for Windows, Mac OS X and Linux. ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a "batteries-included" distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
QuPath - Open-source bioimage analysis for research
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
Collection of mathematical morphology methods and plugins for ImageJ
sciview is a tool for visualization and interaction with ND image and mesh data
KNIME Image Processing Extension
Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.
Tiny Image in Javascript - Edge Detection Algorithms
🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification