mass-spectrometry

The codebase of the OpenMS project

Proteomics search & quantification so fast that it feels like magic

A cross-platform proteomics data analysis suite

mzmine source code repository

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

A modular, python-based framework for mass spectrometry. Powered by nbdev.

pymzML - an interface between Python and mzML Mass spectrometry Files

Python package for efficient mass spectrometry data processing and visualization

Base Classes and Functions for Mass Spectrometry and Proteomics

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering

SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)

Official repository of open data MassBank records, with released versions also available from https://doi.org/10.5281/zenodo.3378723

Protein Identification with Deep Learning

Visualization and Analysis of mass spectrometric and chromatographic data.

Using R and Bioconductor packages for the analysis and comprehension of proteomics data.

LC-MS data processing tool for large-scale metabolomics experiments.

An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.