sequencing

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Sampler, Sequencer, Multi-engine synth and effects - in a box! [WIP]

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Official code repository for GATK versions 4 and up

Data intensive science for everyone.

SPAdes Genome Assembler

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Simple & Efficient data access for Scala and Scala.js

A repository for setting up a RNAseq workflow

A Python package for creating and manipulating musical patterns, designed for use in algorithmic composition, generative music and sonification. Can be used to generate MIDI events, MIDI files, OSC messages, or custom actions.

Structural variant toolkit for VCFs

MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

Rapid large-scale prokaryote pan genome analysis

A minimal and human-readable language and environment for the live coding of algorithmic electronic music.

Analysis Pipeline for Single Cell ATAC-seq

A Java API for high-throughput sequencing data (HTS) formats.

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).

SortMeRNA: next-generation sequence filtering and alignment tool

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads