dna

Official git repository for Biopython (originally converted from CVS)

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Official code repository for GATK versions 4 and up

Data intensive science for everyone.

tools for working with genome variation graphs

Python and C++ code for reading and writing genomics data.

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

A Go package for engineering organisms.

Foundation Models for Genomics & Transcriptomics

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

3d engine implementation in DNA code!

Efficient pythonic random access to fasta subsequences

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

16,432 Free Yara rules created by

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Genomic Pre-trained Network

a JavaScript DNA, RNA, and protein sequence viewer

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model