dna

Official git repository for Biopython (originally converted from CVS)

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Official code repository for GATK versions 4 and up

Data intensive science for everyone.

tools for working with genome variation graphs

Python and C++ code for reading and writing genomics data.

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

A Go package for engineering organisms.

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

3d engine implementation in DNA code!

Efficient pythonic random access to fasta subsequences

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

16,432 Free Yara rules created by

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

A Java API for high-throughput sequencing data (HTS) formats.

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

a JavaScript DNA, RNA, and protein sequence viewer