bam

C library for high-throughput sequencing data formats

a pytorch lib with state-of-the-art architectures, pretrained models and real-time updated results

Tools for working with SAM/BAM data

A Java API for high-throughput sequencing data (HTS) formats.

Syntax highlighting for computational biology

Randomly subsample sequencing reads or alignments

[THIS REPO IS DEPRECATED] see newer repos: https://github.com/broadinstitute/viral-core https://github.com/broadinstitute/viral-assemble https://github.com/broadinstitute/viral-phylo https://github.com/broadinstitute/viral-classify https://github.com/broadinstitute/viral-pipelines

Dashboard composition tooling based on the Uberfire framework

Win 10/11 related research

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.

Learning the Sequence Alignment/Map format

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

A DNA Sequence Alignment/Map (SAM) library for Clojure

https://bamtech.gitbooks.io/dev-standards/

FaceBook Instant Game - BAM Quiz

Creating alignment plots from bam files

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  

Simple pure Python SAM parser and objects for working with SAM records

Frequently used commands in bioinformatics