protein

Official git repository for Biopython (originally converted from CVS)

Protein Graph Library

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

User friendly and accurate binder design pipeline

Official release of the ProGen models

Diffusion models of protein structure; trigonometry and attention are all you need!

Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

A Python Package for Protein Dynamics Analysis

A collection of awesome things regarding all omics.

Efficient pythonic random access to fasta subsequences

A dependency-free cross-platform swiss army knife for PDB files.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Official repository for the ProteinGym benchmarks

Scientific Large Language Models: A Survey on Biological & Chemical Domains

a JavaScript DNA, RNA, and protein sequence viewer

[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models

Evolutionary couplings from protein and RNA sequence alignments

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

A collection of research papers for AI-based protein design

Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)