protein

Official git repository for Biopython (originally converted from CVS)

Protein Graph Library

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

Official release of the ProGen models

Diffusion models of protein structure; trigonometry and attention are all you need!

A collection of awesome things regarding all omics.

User friendly and accurate binder design pipeline

A Python Package for Protein Dynamics Analysis

Efficient pythonic random access to fasta subsequences

Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

A dependency-free cross-platform swiss army knife for PDB files.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

Scientific Large Language Models: A Survey on Biological & Chemical Domains

Official repository for the ProteinGym benchmarks

[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models

a JavaScript DNA, RNA, and protein sequence viewer

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

Evolutionary couplings from protein and RNA sequence alignments

Ribbon diagrams of proteins in #golang.

A collection of research papers for AI-based protein design