sequence-alignment

Official git repository for Biopython (originally converted from CVS)

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Accelerated BLAST compatible local sequence aligner.

The next version of bwa-mem

Versatile open-source tool for microbiome analysis

📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

Sequence-to-graph mapper and graph generator

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Align proteins to genomes with splicing and frameshift

Bidirectionally transformed strings

Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)

LexicMap: efficient sequence alignment against millions of prokaryotic genomes

A fast multiple sequence alignment program.

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

Global alignment and alignment extension

Comparative Genomics Toolkit 3

Neural Networks for Protein Sequence Alignment

Rust bindings to minimap2 library