spliced-alignment

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Rust bindings to minimap2 library

✂️ Deep learning-based splice site predictor that improves spliced alignments

RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.

all the scripts to reproduce the results in the splam paper

This repository provides scripts for RNA-Seq data analysis using JunctionSeq and QoRTs, enabling quality control, differential splicing analysis, and generation of browser tracks.