mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics simulations.

Interaction Fingerprints for protein-ligand complexes and more

Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.

Fast and accurate aerodynamic modeling using general numerical lifting-line theory.

a python package for the interfacial analysis of molecular simulations

A toolkit featured artificial intelligence × ab initio for computational chemistry research.

MDAnalysis tool to calculate membrane curvature.

Parallel algorithms for MDAnalysis

Materials for the 2021 PRACE Workshop @ SurfSARA

a logistics and persistence engine for the analysis of molecular dynamics trajectories

pKa estimates for proteins using an ensemble approach

Command line interface for MDAnalysis

Access to data for workshops and extended tests of MDAnalysis.

Analyse Rotational Diffusion Tensor from MD Simulations

Molecular visualization for MDAnalysis with MolecularNodes in Blender

Molecular Dynamics Simulation of Alanine Dipeptide and Dihedral Angle Analysis

Solvent network analysis. Hop is a python package based on MDAnalysis to analyze solvation dynamics.

SAPT energy calculator built using MDAnalysis and Psi4

Fork of library used in reading xtc files from GROMACS simulations

User friendly molecular dynamics simulation combining GROMACS and Google Colab: A complete guide