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OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
Deep Learning to Improve Breast Cancer Detection on Screening Mammography
dcmqi (DICOM for Quantitative Imaging) is a C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
AI-based pathology predicts origins for cancers of unknown primary - Nature
[Nature Machine Intelligence 2024] Code and evaluation repository for the paper
The MAMA-MIA Dataset: A Multi-Center Breast Cancer DCE-MRI Public Dataset with Expert Segmentations
DCE MRI analysis in Julia
Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]
Probabilistic topic model for identifying cellular micro-environments.
Open source of Pyradiomics extension
The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.
Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.
Code accompanying our ICVGIP 2016 paper
Python Open-source package for medical images processing and radiomics features extraction.
Python implementation of topology descriptors which capture subtle sharpness and curvature differences along the surface of diseased pathologies on imaging.
This repository contains skin cancer lesion detection models. These are trained on a sequential and a custom ResNet model
Predict survival time from PET scans