cancer-imaging-research

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

Deep Learning to Improve Breast Cancer Detection on Screening Mammography

dcmqi (DICOM for Quantitative Imaging) is a C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

AI-based pathology predicts origins for cancers of unknown primary - Nature

[Nature Machine Intelligence 2024] Code and evaluation repository for the paper

The MAMA-MIA Dataset: A Multi-Center Breast Cancer DCE-MRI Public Dataset with Expert Segmentations

DCE MRI analysis in Julia

Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]

Probabilistic topic model for identifying cellular micro-environments.

TriDFusion (3DF) Medical Imaging Viewer

Open source of Pyradiomics extension

The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.

Python Implementation of the CoLlAGe radiomics descriptor. CoLlAGe captures subtle anisotropic differences in disease pathologies by measuring entropy of co-occurrences of voxel-level gradient orientations on imaging computed within a local neighborhood.

Code accompanying our ICVGIP 2016 paper

Official repository for Characterization of tumor heterogeneity through segmentation-free representation learning on multiplexed imaging data

Python Open-source package for medical images processing and radiomics features extraction.

Python implementation of topology descriptors which capture subtle sharpness and curvature differences along the surface of diseased pathologies on imaging.

This repository contains skin cancer lesion detection models. These are trained on a sequential and a custom ResNet model