imaging-informatics

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

dcmqi (DICOM for Quantitative Imaging) is a C++ library for conversion between imaging research formats and the standard DICOM representation for image analysis results

JavaScript client for DICOMweb RESTful services

Core medical image viewer components built using React

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

This repository contains all the code that I have used in my DICOM articles on my blog (Java examples are included)

OHIF Plugin for The Visualization Toolkit (VTK)

Crowd-sourcing annotations of medical images to advance cancer research

This repository contains source code used in the DICOM programming using .NET/C# Tutorials

TriDFusion (3DF) Medical Imaging Viewer

Management of a curated set of common tags for anatomic locations for imaging informatics and a basic site describing the project.

R code and scripts to run the multiplexed imaging normalization methods, detailed in the "Quantifying and correcting slide-to-slide variation in multiplexed immunofluorescence images" paper.

Running cellprofiler on eddie3 / SGE clusters

DeBias decouples global bias from direct interactions in co-orientation and co-localization data.

Learning materials for https://github.com/qiicr/dcmqi

Experimenting with creating functionality similar to google forms with shiny apps and fhir

PIXI is an XNAT plugin designed to help manage and analyze preclinical imaging data.

attempts at a form interface for generating FHIR resources using C# or Python

Programming Framework for Clinical Image Analysis. Python library for MRI data processing.

Example OHIF plugin based using OpenLayers