long-reads

Fast and accurate de novo assembler for long reads

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

PEPPER-Margin-DeepVariant

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

Long read production pipelines

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Tandem repeat expansion detection or genotyping from long-read alignments

Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data

ClairS - a deep-learning method for long-read somatic small variant calling

Graph-based assembly phasing

Yet Another Chimeric Read Detector

Long-reads Gap-free Chromosome-scale Assembler

A fast tool for hybrid genome assembly of long and short reads

⛓ Long Interval Nucleotide K-mer Scaffolder

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping

Scalable long read self-correction and assembly polishing with multiple sequence alignment