taxonomy

A taxonomy for open source cryptocurrency, blockchain, and decentralized ecosystems

MMseqs2: ultra fast and sensitive search and clustering suite

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Accurate sample inference from amplicon data with single nucleotide resolution

Bugcrowd’s baseline priority ratings for common security vulnerabilities

Rinvex Categorizable is a polymorphic Laravel package, for category management. You can categorize any eloquent model with ease, and utilize the power of Nested Sets, and the awesomeness of Sluggable, and Translatable models out of the box.

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

Fast taxonomic classification of metagenomic sequencing reads using a protein reference database

A taxonomic toolbelt for R

Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.

This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].

Application and Python module for average nucleotide identity analyses of microbes.

OneNote (desktop) add-in to manage OneNote pages by page tags

Contains a list of Popoto.js examples

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

🐞 Convert NCBI taxonomy dump into lineages

~ Lightweight, Flexible & Rapid WP Development Framework ~

Sequana: a set of Snakemake NGS pipelines

Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data

R interface to the fishbase.org database