openslide

A fast image processing library with low memory needs.

Python package for dealing with whole slide images (.svs) for machine learning, particularly for fast prototyping. Includes patch sampling and storing using OpenSlide. Patches may be stored in LMDB, HDF5 files, or to disk. It is highly recommended to fork and download this repository so that personal customisations can be made for your work.

Conversion tool/library for converting whole slide images to DICOM

Tool to visualize gigantic pathology images and use AI to segment cancer cells and present as an overlay

Full package for applying deep learning to virtual slides.

🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning

Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

A pyqt5 widget for viewing whole-slide images with Openslide

Preprocessing module for large histological images

a toolbox for manipulation of digital pathology slides and annotations

Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF

European Computer Vision Library (ECVL). A general-purpose computer vision library developed to support healthcare use cases within the DeepHealth project, with the aim of facilitating the integration of existing state-of-the-art libraries.

LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)

manylinux wheel files for girder/large_image dependencies

A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

An ITK ImageIO module for the OpenSlide library.

An application that can quickly view large images like .tif, .svs, .bif, .hdpi, .vms and .mrxs file(s).

A library for training deep neural networks using pathology data by accessing patches on-the-fly

TensorFlow cunstom runner to read micro images from whole slide images.