pdb-files

PDBRipper is a utility for extract an information from PDB-files.

A comprehensive library for computational molecular biology

Working with molecular structures in pandas DataFrames

An open library for the analysis of molecular dynamics trajectories

macromolecular crystallography library and utilities

A bunch of parsers for PE and PDB formats in C++

VSCode Extension for interactively visualising protein structure data in the editor

Standalone program to download PDB Symbol files for debugging without WDK

Dump content of PDB files (program databases) in JSON, XML, SQLite3, CSV etc.

A sample tool for users of Microsoft SQL Server to aid in troubleshooting otherwise difficult to diagnose issues. Provided AS-IS - see SUPPORT.md.

Small class to parse debug info from PEs, download their respective PDBs from the Microsoft Public Symbol Server and calculate RVAs of functions

Benchmarking common tasks on proteins in various languages and packages

Library containing code to manipulate mmCIF and PDB files

Fast and cross-platform parser for Microsoft PDB files

A WinDbg symbol server for all recent versions of CPython.

Cython implementation of PDB -> DataFrame parsing

The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.

A Python script to map PDB ID + chain ID to UniProt ID.

A script able to extract ligands from pdb structure(s) and remove them from the original structure. The ligands are identified according to the *valid* ligands found in the binding MOAD database. The ligand can be extracted as a pdb or as a xyz (coordinate) file. Other options such as converting the queried pdb to pqr are available .

pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files. XEmacs and/or GNU Emacs are available for most computing platforms.