sarscov2

Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

Covid19 UI | Local Data Tracker & Compare the number of deaths in Countries

Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)

SARS-CoV-2 data from Greece | GR | EN

Automatic RNA extraction protocol in OT-2 system (Opentrons)

Covid-19 Sentimental Analysis of Twitter Dataset using Python and Tweepy Library

Single Cell RNA Sequencing with Hybrid Pipeline

Documentation related to the project "Quantifying the Impact of Data Sharing on Outbreak Dynamics" (QIDSOD)

COVID-19 Turkey API and Telegram Bot

Trabalho de conclusão de curso, com o objetivo de desenvolver um pipeline que auxilie decisões de estudos epidemiológicos, além de possíveis análises e diagnósticos laboratoriais.

COVID-19 Turkey API

Vacunacion COVID19 España

A simple tool to generate hierarchical clustering trees from nucleotide sequences. Supports a number of distance metrics and clustering algorithms. Includes a large testset of SARSCOV2 genomes.

Analysis of the origin of SARS-COV 2, how could this pandemic have started?