amino-acid-sequence

Interactive Protein Sequence VIsualization/Viewer - Interactive Circos

Recurrent neural network implementations for protein secondary structure prediction and language models

This Google colab notebook, allows for conservation analysis of user input genes, on their local machine. It relies on the MMSeq2 introduced by https://www.nature.com/articles/s41592-022-01488-1

A Python package that has functions for featue calculation of protein sequences. Features that are calculated by this package are niched for Epitope prediction.

An unofficial re-implementation of PiFold, a fast inverse-folding algorithm for protein sequence design, in PyTorch.

Sequence generation/sequence to sequence learning using amino acid sequences of Corona virus (SARS-COV2) by training on generative adversial network (GAN)

DNA to Protein sequence perl app.

IsoAligner: dynamic mapping of amino acid positions across protein isoforms

In Agglomerative we start with all points as individual clusters and then keep on combining clusters until required number of clusters are not formed using linkages like single, complete, average, ward or centroid.

Association Rules for regex patterns in amino acid sequences

Protein to RNA reverse translation

Graph Network for Protein

We're encoding the amino acid sequence into binary strings and building a quantum circuit for each one. Then, we're creating a list of Pauli operators for each circuit, one for each qubit, and multiplying them together to get a badass Hamiltonian.

NAUniSeq: A fast computational pipeline to search unique sequences for microbial diagnostics

Homework 2 for MCS 5603 Intro to Bioinformatics. Written in Python.

DNA mRNA AA

Creating plots using FASTA amino-acid files

Narrowly, Find sequences including nucleotide(or amino acid) spacers (Broadly, you can find the speific sequences of front and back while ignoring the middle sequences), and Write the result of finding them to csv files.(Language: Python3.9)

Python Scripts for Haim Lab (Microbiology Research) Projects

An application for illustrating the relative distances between protein structures.